Xcode 13 regression: Archiving of projects referencing binary packages fails with increasing number of packages

It's interesting that you didn't have these issues prior to Xcode 13. Multiple people already had issues with binaries and SPM in Xcode 12.5 and earlier. See here: Headers not found for an XCFramework packaging a static lib for iOS (critical). This thread also contains a link to a Bug report.

Your issue seems to be the same or at least related.

Note, the release notes of Xcode 13 contain this in the known issue section:

  • Using Swift packages with binary targets may result in a “no such module” error when attempting to import the module of a binary target. (77465707)